Supporting tables for Gamma-crystallins of the chicken lens: remnants of an ancient vertibrate gene family in birds

Lens Proteomics Key
Protein Intensities
Protein Counts
Peptide Counts
Soluble Peptides
Insoluble Peptides
Ensemble Matches
Crystallins


Crystallins

Accession Coverage Length UniProt Description Ensembl Description Gene Water-Insoluble Water-Soluble RelCrystallinAbundance* Water-Insoluble RelCrystallinAbundance* Water-Soluble Water-Insoluble Water-Soluble RelCrystallinAbundance** Water-Insoluble RelCrystallinAbundance** Water-Soluble
ARLY1_CHICK_family '(93.6) 466 (Delta-1 crystallin) Gallus gallus argininosuccinate lyase (ASL1), mRNA. [Source:RefSeq mRNA;Acc:NM_205501] (g:2558, t:39936). ASL1 1,459,526,018 2,408,501,390 39.21 41.64 3,132,030 5,168,458 22.24 24.16
CRBA1_CHICK 90.7 215 Beta-crystallin A3 Gallus gallus crystallin, beta A1 (CRYBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_205502] (g:4035, t:6426). CRYBA1 305,694,576 669,234,985 8.21 11.57 1,421,835 3,112,721 10.10 14.55
F1NZM5_CHICK_family '(83.6) 219 (Beta-crystallin B2) beta-crystallin B2 [Source:RefSeq peptide;Acc:NP_990506] (g:26086, t:38648). CRYBB2 369,352,621 626,037,083 9.92 10.82 1,686,542 2,858,617 11.97 13.37
CRBB1_CHICK 92.0 238 Beta-crystallin B1 Gallus gallus crystallin, beta B1 (CRYBB1), mRNA. [Source:RefSeq mRNA;Acc:NM_204180] (g:5630, t:9031). CRYBB1 397,496,632 575,267,397 10.68 9.94 1,670,154 2,417,090 11.86 11.30
CRBB3_CHICK 87.7 211 Beta-crystallin B3 Gallus gallus crystallin, beta B3 (CRYBB3), mRNA. [Source:RefSeq mRNA;Acc:NM_205191] (g:5515, t:38650). CRYBB3 445,931,052 509,343,098 11.98 8.80 2,113,417 2,413,948 15.01 11.29
CRBA2_CHICK 82.1 196 Beta-crystallin A2 Gallus gallus crystallin, beta A2 (CRYBA2), mRNA. [Source:RefSeq mRNA;Acc:NM_204179] (g:11354, t:18525). CRYBA2 278,393,061 455,462,272 7.48 7.87 1,420,373 2,323,787 10.08 10.86
CRYAB_CHICK 93.7 174 Alpha-crystallin B chain Alpha-crystallin B chain [Source:UniProtKB/Swiss-Prot;Acc:Q05713] (g:7945, t:12907). CRYAB 198,993,239 288,235,166 5.35 4.98 1,143,639 1,656,524 8.12 7.74
CRYAA_CHICK 97.7 173 Alpha-crystallin A chain Gallus gallus crystallin, alpha A (CRYAA), mRNA. [Source:RefSeq mRNA;Acc:NM_001030797] (g:16199, t:36695). CRYAA 118,866,018 147,902,520 3.19 2.56 687,087 854,928 4.88 4.00
D0UYB8_CHICK 80.3 178 Gamma S-crystallin Gallus gallus crystallin, gamma S (CRYGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001170527] (g:6574, t:33511). CRYGS 89,442,851 93,581,720 2.40 1.62 502,488 525,740 3.57 2.46
F1NGK4_CHICK 91.3 196 Beta-crystallin A4 Gallus gallus crystallin, beta A4 (CRYBA4), mRNA. [Source:RefSeq mRNA;Acc:NM_204178] (g:5634, t:9039). CRYBA4 40,818,819 8,667,018 1.10 0.15 208,259 44,219 1.48 0.21
F2Z4K3_CHICK 77.0 183 Uncharacterized protein (gamma N) Gallus gallus crystallin, gamma N (CRYGN), mRNA. [Source:RefSeq mRNA;Acc:NM_001166674] (g:6189, t:9986). CRYGN 17,823,039 2,059,518 0.479 0.036 97,394 11,254 0.692 0.053
E1C5W9_CHICK 34.7 314 Uncharacterized protein crystallin, mu [Source:HGNC Symbol;Acc:HGNC:2418] (g:2484, t:3915). CRYM 156,813 279,295 0.004 0.005 499 889 0.004 0.004
F1P4I0_CHICK 39.3 331 Uncharacterized protein Gallus gallus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_001079763] (g:11361, t:18533). CRYZ 77,283 87,432 0.002 0.002 233 264 0.002 0.001
F1NPU2_CHICK 29.7 316 Uncharacterized protein Gallus gallus crystallin, lambda 1 (CRYL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001030830] (g:17135, t:30086). CRYL1 30,682 61,723 0.001 0.001 97 195 0.001 0.001
crystallin totals 3722602704 5,784,720,615 14,084,048 21,388,635
all protein totals 7,371,619,311 6,106,628,282
% crystallins 50.5 94.7

*like weight percentage
** like molar concentrations

Query database: E:/PSR_Core_Analysis/David_120114/compare_DB_intensity/uniprot-proteome_UP000000539_chick.fasta_subset.fasta
Hit database: E:/PSR_Core_Analysis/David_120114/compare_DB_intensity/Gallus_gallus.Galgal4.pep.all.fixed.fasta_subset.fasta